bowtie-0.12.
7
.............\
AUTHORS,703,2009-12-12
.............
\bowtie,773677,2010-09-08
.............
\bowtie-build,327545,2010-09-08
.............
\bowtie-build-debug,2683055,2010-09-08
.............
\bowtie-debug,6930626,2010-09-08
.............
\bowtie-inspect,238105,2010-09-08
.............
\bowtie-inspect-debug,1521358,2010-09-08
.............\
COPYING,5207,2008-08-14
.............
\doc
.............\...\manual.
html,119040,2010-09-08
.............\...
\README,150,2009-11-27
.............\...\style.
css,4182,2009-12-17
.............
\genomes
.............\.......\NC_008253.
fna,5009545,2008-08-14
.............
\indexes
.............\.......\e_coli.1.
ebwt,1476941,2010-08-29
.............\.......\e_coli.2.
ebwt,617372,2009-02-17
.............\.......\e_coli.3.
ebwt,17,2009-02-17
.............\.......\e_coli.4.
ebwt,1234730,2009-02-17
.............\.......\e_coli.
README,277,2010-08-29
.............\.......\e_coli.rev.1.
ebwt,1476941,2010-09-08
.............\.......\e_coli.rev.2.
ebwt,617372,2009-02-17
.............\
MANUAL,69183,2010-09-08
.............\MANUAL.
markdown,80488,2010-09-08
.............\
NEWS,29755,2010-09-08
.............
\reads
.............\.....\e_coli_1000.
fa,41890,2008-08-14
.............\.....\e_coli_1000.
fq,79890,2008-08-14
.............\.....\e_coli_1000.
raw,36000,2008-09-15
.............\.....\e_coli_10000snp.
fa,428890,2008-11-06
.............\.....\e_coli_10000snp.
fq,808890,2008-11-06
.............\.....\e_coli_1000_1.
fa,43890,2009-02-17
.............\.....\e_coli_1000_1.
fq,81890,2009-02-17
.............\.....\e_coli_1000_2.
fa,40890,2009-02-17
.............\.....\e_coli_1000_2.
fq,75890,2009-02-17
.............
\scripts
.............\.......\best_verify.
pl,5251,2010-08-28
.............\.......\bs_mapability.
pl,6996,2010-03-26
.............\.......\build_test.
sh,264,2008-09-13
.............\.......\colorize_fasta.
pl,1162,2010-02-18
.............\.......\colorize_fastq.
pl,1206,2010-09-08
.............\.......\convert_quals.
pl,2662,2009-06-02
.............\.......\fastq_to_tabbed.
pl,2558,2009-11-14
.............\.......\gen_2b_occ_lookup.
pl,2322,2009-06-02
.............\.......\gen_dnamasks2colormask.
pl,803,2010-06-06
.............\.......\gen_occ_lookup.
pl,5956,2009-05-06
.............\.......\gen_solqual_lookup.
pl,1352,2009-05-06
.............\.......\make_a_thaliana_tair.
sh,1231,2009-12-13
.............\.......\make_b_taurus_UMD3.
sh,1462,2009-12-08
.............\.......\make_canFam2.
sh,1318,2009-12-12
.............\.......\make_c_elegans_ws200.
sh,1108,2009-12-08
.............\.......\make_d_melanogaster_fb5_22.
sh,1308,2009-12-08
.............\.......\make_e_coli.
sh,1077,2009-12-08
.............\.......\make_galGal3.
sh,1919,2010-06-18
.............\.......\make_hg18.
sh,2231,2009-12-08
.............\.......\make_hg19.
sh,3170,2009-12-08
.............\.......\make_h_sapiens_ncbi36.
sh,2454,2009-12-08
.............\.......\make_h_sapiens_ncbi37.
sh,2166,2009-12-08
.............\.......\make_mm8.
sh,1903,2010-07-30
.............\.......\make_mm9.
sh,1913,2009-12-08
.............\.......\make_m_musculus_ncbi37.
sh,1630,2009-12-08
.............\.......\make_rn4.
sh,2035,2009-12-12
.............\.......\make_s_cerevisiae.
sh,1127,2009-12-08
.............\.......\mapability.
pl,4751,2010-03-26
.............\.......\pe_verify.
pl,10945,2010-02-02
.............\.......\random_bowtie_tests.
pl,34187,2010-09-04
.............\.......\random_bowtie_tests.
sh,1301,2009-12-12
.............\.......\random_bowtie_tests_p.
sh,660,2009-12-12
.............\.......\reconcile_alignments.
pl,9713,2010-02-02
.............\.......\reconcile_alignments_pe.
pl,15493,2010-02-02
.............\.......\test.
pl
.............\
TUTORIAL,6258,2009-10-06
.............
\VERSION,6,2010-09-08
